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VisitWill Sylph model be widely adopted in metagenomics research by 2025?
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No • 50%
Research papers and citations in major scientific journals
New Model 'sylph' Enhances Metagenome Profiling and ANI Estimation
Oct 9, 2024, 05:01 PM
Researchers have introduced 'sylph,' a statistical model designed for rapid species-level metagenome profiling and containment estimation. Sylph, which utilizes zero-inflated Poisson statistics, addresses the low-abundance ANI (Average Nucleotide Identity) calculation problem under low coverage. It estimates the containment ANI between a reference genome and a shotgun metagenomic sample by comparing the genome against the reads. This method generalizes the standard genome-to-genome ANI, making it a significant advancement in metagenomics. The research on sylph was highlighted in @NatureBiotech.
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Phylogenetic reconstruction • 25%
Taxonomic annotation • 25%
Evolutionary distance estimation • 25%
Other • 25%
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LG+GC • 25%
LG+GC with indels • 25%
CherryML co-evolution model • 25%
SelReg with selection • 25%
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Tools for RNA viruses • 25%
Tools for DNA viruses • 25%
Tools for both RNA and DNA viruses • 25%
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GenBank • 25%
RefSeq • 25%
Both GenBank and RefSeq • 25%
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Other • 25%
Nature Biotechnology • 25%
Science • 25%
Cell • 25%